I'll probably add more as I find them.
http://serverfault.com/questions/4176/what-sysadmin-things-should-every-programmer-know
This answer to the above specifically covers how to debug networking issues for devs:
http://serverfault.com/a/4303/75301
A Small List of Best Practices for Sysadmins and Programmers - has a lot of links to other helpful pages
Linux: 25 PHP Security Best Practices For Sys Admins
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